Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7895

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16263 and 16264 are separated by 158 nucleotides mRNA_7895: 16263 - KOG0027 Calmodulin and related proteins (EF-Hand superfamily), at 1,323,033 to 1,324,122 16263 mRNA_7896: 16264 - K01783 rpe, RPE ribulose-phosphate 3-epimerase, at 1,324,281 to 1,325,324 16264

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,322,071 + +1.1
1,322,146 + +0.5
1,322,183 - -0.5
1,322,184 + -0.7
1,322,288 - -1.9
1,322,328 - +2.3
1,324,139 - -2.0

Or see this region's nucleotide sequence