Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7957

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16324 and 16325 are separated by 267 nucleotides16325 and 16326 are separated by 574 nucleotides mRNA_7956: 16324 - K03146 THI4, THI1 thiamine thiazole synthase, at 96,703 to 99,029 16324 mRNA_7957: 16325 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 99,297 to 100,218 16325 mRNA_7958: 16326 - Hypothetical Protein, at 100,793 to 101,343 16326

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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98,340 + 16324 mRNA_7956 0.70 -2.2
98,343 - 16324 mRNA_7956 0.70 -0.2
98,797 + -0.5
98,905 + -0.1
98,941 - -0.4
98,943 - -0.4
98,982 + +0.3
99,218 + -1.3
99,418 - 16325 mRNA_7957 0.13 -1.1
99,423 + 16325 mRNA_7957 0.14 -1.6
99,500 + 16325 mRNA_7957 0.22 -1.7
99,652 - 16325 mRNA_7957 0.39 +0.7
99,858 + 16325 mRNA_7957 0.61 -1.7
99,861 - 16325 mRNA_7957 0.61 +0.0
99,873 + 16325 mRNA_7957 0.62 -3.5
100,150 + +0.2
100,305 - -1.5
100,466 + -2.3
100,539 + -0.0
100,541 - +0.3
100,589 + -1.1
100,759 - -2.0

Or see this region's nucleotide sequence