Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7991

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16359 and 16360 are separated by 512 nucleotides mRNA_7991: 16359 - K02132 ATPeF1A, ATP5A1, ATP1 F-type H+-transporting ATPase subunit alpha, at 160,884 to 163,546 16359 mRNA_7992: 16360 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 164,059 to 164,941 16360

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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159,922 + -2.2
160,312 - -0.3
160,349 + -2.7
160,362 + -3.2
160,620 + -4.1
160,654 - -1.1
160,655 + -1.3
160,666 + -2.1
160,748 - -1.8
160,812 + -4.9
160,816 + +1.8
160,823 + -2.1
160,824 + -1.8
160,834 - -2.0
160,834 - -1.1
160,836 + -0.3
160,838 - -2.5
160,843 + -1.6
160,852 - -2.9
160,858 + -0.2
160,858 + -0.6
163,573 + -2.6
163,616 - -3.5
163,747 - +0.2
163,756 + -0.8
164,105 - -1.5
164,109 - +0.5
164,184 + 16360 mRNA_7992 0.14 -0.6
164,412 - 16360 mRNA_7992 0.40 +0.7

Or see this region's nucleotide sequence