Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8025

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16392 and 16393 are separated by 486 nucleotides16393 and 16394 are separated by 311 nucleotides mRNA_8024: 16392 - K02988 RP-S5, MRPS5, rpsE small subunit ribosomal protein S5, at 233,351 to 234,544 16392 mRNA_8025: 16393 - KOG0118 FOG RRM domain, at 235,031 to 239,261 16393 mRNA_8026: 16394 - K03515 REV1 DNA repair protein REV1, at 239,573 to 243,561 16394

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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234,578 - -1.0
234,578 - +0.4
234,579 - +0.1
234,600 - -1.2
234,600 - -1.0
234,600 - -1.6
234,600 - -2.8
234,605 + -0.9
234,610 - +1.2
234,616 - -1.7
234,617 + -1.0
234,621 - -0.6
234,625 - -4.2
234,736 - -2.0
234,739 - -2.3
234,741 + -2.1
234,772 - -2.4
234,880 - -1.1
234,913 + -1.3
235,036 - -1.8
235,053 - -1.8
235,072 + -0.4
235,174 + -2.6
235,467 - 16393 mRNA_8025 0.10 -2.0
235,484 + 16393 mRNA_8025 0.11 -2.8
235,498 + 16393 mRNA_8025 0.11 +0.4
235,619 - 16393 mRNA_8025 0.14 -1.2
235,663 + 16393 mRNA_8025 0.15 -2.7
235,774 - 16393 mRNA_8025 0.18 -1.4
236,604 + 16393 mRNA_8025 0.37 -1.8
236,641 - 16393 mRNA_8025 0.38 -1.6
237,049 - 16393 mRNA_8025 0.48 -0.7
238,058 + 16393 mRNA_8025 0.72 -0.5
238,314 - 16393 mRNA_8025 0.78 -1.8
238,482 - 16393 mRNA_8025 0.82 -2.1
238,894 - -0.3
238,928 - -1.9
239,064 + +2.0
239,345 + -1.8
239,352 + +0.5
239,353 + -2.0
239,357 + -3.5
239,374 + -0.9
239,484 + -1.2
239,490 - -2.7
239,490 - -4.2
239,496 - -2.5
239,507 - -1.2
239,511 - -0.4
239,525 + -4.4
239,534 + -3.5
239,631 - -0.6
239,678 + -2.6
239,698 + -1.8
239,837 + -0.4
239,842 + -1.7
239,843 + +0.5
239,848 - -2.3
239,849 + -2.6
239,866 - -1.2
239,979 + 16394 mRNA_8026 0.10 -2.2
240,060 + 16394 mRNA_8026 0.12 -3.8
240,092 + 16394 mRNA_8026 0.13 -0.4
240,125 - 16394 mRNA_8026 0.14 +1.0

Or see this region's nucleotide sequence