Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8033

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16400 and 16401 are separated by 265 nucleotides mRNA_8032: 16400 - K14007 SEC24 protein transport protein SEC24, at 253,423 to 257,120 16400 mRNA_8033: 16401 - K08488 STX7 syntaxin 7, at 257,386 to 258,889 16401

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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257,260 - -1.7
257,277 - -0.9
257,278 - -1.4
257,279 - -3.3
259,015 - -2.8
259,044 + -0.7
259,145 - -0.6
259,147 - -2.2
259,164 + -0.8
259,196 - -1.1
259,202 - +0.7
259,225 - -1.2
259,289 - -3.0
259,289 + -2.4
259,342 - -0.7
259,438 - -3.2
259,441 - +0.4
259,479 - -1.9
259,481 + -4.1
259,494 + -0.4
259,577 - -0.7
259,636 + +1.0
259,657 + -2.8
259,658 - +0.6
259,660 - -0.4
259,660 + +0.4
259,661 + -1.4
259,699 - -1.9
259,701 + -2.3
259,721 - -3.1
259,726 + -1.0
259,743 + -0.3
259,858 - +1.9

Or see this region's nucleotide sequence