Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8034

Experiment: 40 hrs No Buoyancy Separation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16402 and 16403 are separated by 259 nucleotides mRNA_8034: 16402 - K00898 PDK2_3_4 pyruvate dehydrogenase kinase 2/3/4, at 272,460 to 275,670 16402 mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275,930 to 278,853 16403

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
remove
271,576 + -4.0
271,616 - -1.3
271,624 - -0.9
271,624 - -2.4
271,751 + -1.2
271,769 - -0.4
271,783 + -1.2
271,789 + -3.3
271,805 + -3.5
271,842 + -2.3
271,882 + -1.5
271,888 - -2.1
271,920 - -0.8
271,923 + -1.3
271,939 + -0.1
271,943 - -2.1
272,097 + -2.0
272,099 - -2.4
272,247 + -3.0
272,253 - -1.7
272,348 + -1.5
272,372 - -3.1
272,374 - -1.6
272,518 - +0.1
272,537 + -0.3
272,643 + -1.9
272,649 - -1.9
272,686 - +0.1
272,694 - -2.8
272,704 + -2.2
272,795 - 16402 mRNA_8034 0.10 -1.1
272,800 + 16402 mRNA_8034 0.11 -1.3
272,803 + 16402 mRNA_8034 0.11 -0.1
272,805 + 16402 mRNA_8034 0.11 -2.5
272,826 - 16402 mRNA_8034 0.11 -0.8
272,847 + 16402 mRNA_8034 0.12 -0.2
272,848 + 16402 mRNA_8034 0.12 -1.2
272,885 - 16402 mRNA_8034 0.13 -2.3
272,935 + 16402 mRNA_8034 0.15 -0.4
273,010 + 16402 mRNA_8034 0.17 -1.7
273,040 + 16402 mRNA_8034 0.18 -0.9
273,048 + 16402 mRNA_8034 0.18 -1.7
273,053 - 16402 mRNA_8034 0.18 +0.3
273,054 + 16402 mRNA_8034 0.18 -0.1
273,062 + 16402 mRNA_8034 0.19 -1.9
273,068 + 16402 mRNA_8034 0.19 -0.6
273,132 - 16402 mRNA_8034 0.21 -0.6
273,153 - 16402 mRNA_8034 0.22 -2.8
273,183 - 16402 mRNA_8034 0.23 -3.8
273,183 - 16402 mRNA_8034 0.23 -3.6
273,233 - 16402 mRNA_8034 0.24 +0.3
273,331 - 16402 mRNA_8034 0.27 -0.6
273,402 - 16402 mRNA_8034 0.29 -0.3
273,484 + 16402 mRNA_8034 0.32 +0.7
273,828 - 16402 mRNA_8034 0.43 -2.3
273,953 + 16402 mRNA_8034 0.46 -1.3
274,100 - 16402 mRNA_8034 0.51 -0.6
274,229 - 16402 mRNA_8034 0.55 -2.9
274,242 - 16402 mRNA_8034 0.55 -0.3
274,509 - 16402 mRNA_8034 0.64 +0.9
274,826 + 16402 mRNA_8034 0.74 -2.1
275,072 - 16402 mRNA_8034 0.81 -1.6
275,104 - 16402 mRNA_8034 0.82 -2.3
275,223 + 16402 mRNA_8034 0.86 -2.5
275,384 - -2.3
275,417 - -0.1
275,435 + -1.0
275,541 - -0.7
275,563 - -0.2
275,564 - -0.7
275,565 - -0.6
275,571 - -2.5
275,610 - -0.8
275,613 + -2.7
275,633 + +1.5
275,705 - -1.5
275,709 - -2.5
275,713 - +0.6
275,716 + -0.4
275,718 - -3.1
275,723 - -1.0
275,723 - -0.7
275,726 + +0.9
275,735 + -0.1
275,742 - -1.9
275,763 - -1.2
275,763 + -3.7
276,030 + -3.2
276,083 - -2.2
276,166 - +0.4
276,201 - -2.0
276,456 + 16403 mRNA_8035 0.18 -1.3
276,510 - 16403 mRNA_8035 0.20 -0.1

Or see this region's nucleotide sequence