Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8036

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16403 and 16404 are separated by 550 nucleotides16404 and 16405 are separated by 171 nucleotides mRNA_8035: 16403 - KOG4350 Uncharacterized conserved protein, contains BTB/POZ domain, at 275,930 to 278,853 16403 mRNA_8036: 16404 - K01942 HLCS biotin--protein ligase, at 279,404 to 281,646 16404 mRNA_8037: 16405 - K14797 ENP1, BYSL essential nuclear protein 1, at 281,818 to 283,593 16405

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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278,602 - -0.7
278,682 - -1.7
278,919 - -2.5
279,072 - -2.0
279,079 + -2.2
279,221 - -1.1
279,221 - -0.8
279,241 + -1.9
279,250 - -2.9
279,348 + -0.0
279,359 - +0.4
279,360 - -2.3
279,366 + -1.7
279,375 + -0.9
279,379 + +0.4
281,089 + 16404 mRNA_8036 0.75 -2.6
281,712 + +1.0
281,737 + -2.4
281,747 - -0.7
281,765 - -1.9
281,778 + +0.2
281,784 - -0.3

Or see this region's nucleotide sequence