Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8077

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16444 and 16445 are separated by 359 nucleotides16445 and 16446 are separated by 194 nucleotides mRNA_8076: 16444 - Hypothetical Protein, at 368,382 to 369,179 16444 mRNA_8077: 16445 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 369,539 to 370,935 16445 mRNA_8078: 16446 - HMMPfam-ER membrane protein SH3-PF08229,SMART-ER membrane protein SH3-SM00786, at 371,130 to 372,195 16446

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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368,553 + 16444 mRNA_8076 0.21 +1.2
368,564 + 16444 mRNA_8076 0.23 -0.7
368,574 - 16444 mRNA_8076 0.24 -1.0
368,581 + 16444 mRNA_8076 0.25 -1.7
368,584 + 16444 mRNA_8076 0.25 -0.2
368,585 - 16444 mRNA_8076 0.25 -2.5
368,595 - 16444 mRNA_8076 0.27 -0.5
368,596 + 16444 mRNA_8076 0.27 -0.8
368,602 - 16444 mRNA_8076 0.28 +0.3
368,606 - 16444 mRNA_8076 0.28 -2.3
368,607 + 16444 mRNA_8076 0.28 -1.2
368,608 + 16444 mRNA_8076 0.28 -2.4
368,610 - 16444 mRNA_8076 0.29 -0.5
368,611 + 16444 mRNA_8076 0.29 -3.7
368,611 + 16444 mRNA_8076 0.29 -1.6
368,623 + 16444 mRNA_8076 0.30 -0.6
368,624 - 16444 mRNA_8076 0.30 +0.3
368,641 + 16444 mRNA_8076 0.32 -2.7
368,642 - 16444 mRNA_8076 0.33 +0.2
368,642 - 16444 mRNA_8076 0.33 -2.2
368,664 - 16444 mRNA_8076 0.35 -1.9
368,668 + 16444 mRNA_8076 0.36 -1.4
368,678 - 16444 mRNA_8076 0.37 -1.2
368,693 - 16444 mRNA_8076 0.39 -3.4
368,693 + 16444 mRNA_8076 0.39 -0.6
368,696 + 16444 mRNA_8076 0.39 -0.9
368,718 + 16444 mRNA_8076 0.42 -3.1
368,724 - 16444 mRNA_8076 0.43 -1.5
368,727 + 16444 mRNA_8076 0.43 -1.3
368,738 - 16444 mRNA_8076 0.45 -0.5
368,743 + 16444 mRNA_8076 0.45 -2.2
368,744 - 16444 mRNA_8076 0.45 -1.9
368,745 + 16444 mRNA_8076 0.45 -1.1
368,747 - 16444 mRNA_8076 0.46 +1.3
368,747 - 16444 mRNA_8076 0.46 -1.1
368,763 - 16444 mRNA_8076 0.48 -1.8
368,765 + 16444 mRNA_8076 0.48 +0.6
368,766 + 16444 mRNA_8076 0.48 +0.4
368,769 - 16444 mRNA_8076 0.48 -0.1
368,770 - 16444 mRNA_8076 0.49 -0.7
368,774 - 16444 mRNA_8076 0.49 +0.3
368,775 + 16444 mRNA_8076 0.49 -2.1
368,775 + 16444 mRNA_8076 0.49 +0.8
368,775 + 16444 mRNA_8076 0.49 +0.0
368,776 - 16444 mRNA_8076 0.49 -0.8
368,779 - 16444 mRNA_8076 0.50 -0.2
368,786 + 16444 mRNA_8076 0.51 -1.0
368,788 + 16444 mRNA_8076 0.51 -1.4
368,796 + 16444 mRNA_8076 0.52 -4.1
368,796 + 16444 mRNA_8076 0.52 -2.2
368,817 - 16444 mRNA_8076 0.55 -2.1
368,881 + 16444 mRNA_8076 0.63 +0.4
368,912 + 16444 mRNA_8076 0.66 +0.1
368,918 + 16444 mRNA_8076 0.67 +0.7
368,928 + 16444 mRNA_8076 0.68 -0.3
368,932 + 16444 mRNA_8076 0.69 -0.6
368,932 + 16444 mRNA_8076 0.69 -1.1
368,936 - 16444 mRNA_8076 0.69 -1.1
368,938 - 16444 mRNA_8076 0.70 +0.3
368,940 - 16444 mRNA_8076 0.70 -2.7
368,940 - 16444 mRNA_8076 0.70 -0.4
368,943 - 16444 mRNA_8076 0.70 -1.6
368,943 - 16444 mRNA_8076 0.70 -1.9
368,949 - 16444 mRNA_8076 0.71 -2.8
368,949 - 16444 mRNA_8076 0.71 -1.4
368,950 + 16444 mRNA_8076 0.71 -1.4
368,955 + 16444 mRNA_8076 0.72 -0.3
368,956 - 16444 mRNA_8076 0.72 -3.4
368,956 + 16444 mRNA_8076 0.72 -1.3
368,956 + 16444 mRNA_8076 0.72 -0.0
368,958 - 16444 mRNA_8076 0.72 -1.0
368,958 + 16444 mRNA_8076 0.72 -1.2
368,959 + 16444 mRNA_8076 0.72 +0.2
368,961 - 16444 mRNA_8076 0.73 -3.3
368,969 - 16444 mRNA_8076 0.74 -0.6
368,974 + 16444 mRNA_8076 0.74 -0.4
368,979 - 16444 mRNA_8076 0.75 -4.0
368,982 + 16444 mRNA_8076 0.75 -0.1
368,984 + 16444 mRNA_8076 0.75 -0.1
368,988 - 16444 mRNA_8076 0.76 -1.0
368,988 + 16444 mRNA_8076 0.76 -0.7
368,989 - 16444 mRNA_8076 0.76 +0.4
369,001 + 16444 mRNA_8076 0.78 -3.5
369,045 - 16444 mRNA_8076 0.83 -2.1
369,049 + 16444 mRNA_8076 0.84 +0.6
369,058 - 16444 mRNA_8076 0.85 -1.4
369,059 - 16444 mRNA_8076 0.85 -2.0
369,073 + 16444 mRNA_8076 0.87 -1.7
369,075 - 16444 mRNA_8076 0.87 +0.8
369,080 + 16444 mRNA_8076 0.87 -1.2
369,084 + 16444 mRNA_8076 0.88 -0.5
369,110 + -1.1
369,170 - -1.1
369,203 - +0.4
369,207 - +0.3
369,211 + -0.4
369,213 - -1.7
369,242 + -2.1
369,259 + -0.8
369,272 - -1.9
369,286 + -3.0
369,323 + -2.5
369,330 - -1.5
369,331 + -1.6
369,337 - -1.9
369,339 - -0.8
369,343 + -1.5
369,343 - -1.1
369,345 + -1.0
369,348 + -1.0
369,349 + +0.4
369,354 + +0.1
369,354 - -0.6
369,355 - -1.1
369,355 + +1.0
369,359 - -1.9
369,361 + -2.7
369,366 + -1.2
369,366 + +0.0
369,366 + +1.9
369,370 + -1.7
369,370 + -0.7
369,371 - -1.0
369,372 - -2.9
369,372 - -2.2
369,372 + +0.8
369,373 - -3.2
369,373 - -0.8
369,375 - +0.4
369,375 + -2.5
369,376 + -2.0
369,382 + -0.6
369,394 - -1.1
369,407 - -0.9
369,511 + -1.8
369,514 - -1.4
369,514 - -2.8
369,518 - -1.2
369,529 - -2.6
369,534 - -0.7
369,536 - -0.6
369,540 + +0.0
369,547 - -1.1
369,549 + -1.0
369,560 - +0.4
369,561 - -1.9
369,618 - -0.8
369,639 + -0.8
369,684 - 16445 mRNA_8077 0.10 -1.9
369,689 - 16445 mRNA_8077 0.11 -0.2
369,695 + 16445 mRNA_8077 0.11 -0.8
369,709 + 16445 mRNA_8077 0.12 -2.0
369,711 + 16445 mRNA_8077 0.12 -1.4
369,718 - 16445 mRNA_8077 0.13 -0.8
369,731 - 16445 mRNA_8077 0.14 -0.9
369,740 + 16445 mRNA_8077 0.14 -2.1
369,744 - 16445 mRNA_8077 0.15 +0.5
369,745 + 16445 mRNA_8077 0.15 +0.2
369,756 + 16445 mRNA_8077 0.16 -2.3
369,760 + 16445 mRNA_8077 0.16 -0.4
369,768 + 16445 mRNA_8077 0.16 -1.7
369,771 + 16445 mRNA_8077 0.17 +1.3
369,778 - 16445 mRNA_8077 0.17 -0.5
369,780 + 16445 mRNA_8077 0.17 -1.1
369,792 + 16445 mRNA_8077 0.18 +0.5
369,805 - 16445 mRNA_8077 0.19 -2.3
369,822 - 16445 mRNA_8077 0.20 -1.0
369,827 - 16445 mRNA_8077 0.21 -0.7
369,850 + 16445 mRNA_8077 0.22 -0.7
369,850 + 16445 mRNA_8077 0.22 -2.2
369,852 + 16445 mRNA_8077 0.22 -2.2
369,862 + 16445 mRNA_8077 0.23 -3.3
369,863 - 16445 mRNA_8077 0.23 -1.6
369,863 - 16445 mRNA_8077 0.23 -1.0
369,863 - 16445 mRNA_8077 0.23 -2.6
369,863 - 16445 mRNA_8077 0.23 -2.0
369,864 + 16445 mRNA_8077 0.23 -2.1
369,866 + 16445 mRNA_8077 0.23 -1.4
369,868 - 16445 mRNA_8077 0.24 -1.1
369,891 - 16445 mRNA_8077 0.25 -1.1
369,919 + 16445 mRNA_8077 0.27 -2.1
369,929 - 16445 mRNA_8077 0.28 +0.3
369,956 + 16445 mRNA_8077 0.30 -0.1
369,966 + 16445 mRNA_8077 0.31 -1.2
369,979 - 16445 mRNA_8077 0.31 -0.2
369,990 - 16445 mRNA_8077 0.32 -1.1
369,996 + 16445 mRNA_8077 0.33 -0.3
370,020 + 16445 mRNA_8077 0.34 -0.8
370,030 - 16445 mRNA_8077 0.35 -2.7
370,032 - 16445 mRNA_8077 0.35 +0.0
370,047 - 16445 mRNA_8077 0.36 +1.1
370,048 + 16445 mRNA_8077 0.36 -1.9
370,055 - 16445 mRNA_8077 0.37 +0.7
370,056 - 16445 mRNA_8077 0.37 -0.1
370,057 + 16445 mRNA_8077 0.37 -1.0
370,071 - 16445 mRNA_8077 0.38 -1.7
370,073 - 16445 mRNA_8077 0.38 -2.1
370,091 - 16445 mRNA_8077 0.40 -1.0
370,094 + 16445 mRNA_8077 0.40 -1.0
370,096 - 16445 mRNA_8077 0.40 -1.4
370,101 + 16445 mRNA_8077 0.40 +0.3
370,102 - 16445 mRNA_8077 0.40 -0.2
370,109 - 16445 mRNA_8077 0.41 -0.7
370,110 + 16445 mRNA_8077 0.41 -3.2
370,118 + 16445 mRNA_8077 0.41 -2.3
370,138 + 16445 mRNA_8077 0.43 -0.2
370,141 + 16445 mRNA_8077 0.43 -2.0
370,146 - 16445 mRNA_8077 0.43 -0.5
370,156 - 16445 mRNA_8077 0.44 -1.1
370,163 - 16445 mRNA_8077 0.45 -0.0
370,215 + 16445 mRNA_8077 0.48 -0.7
370,241 - 16445 mRNA_8077 0.50 -2.3
370,260 + 16445 mRNA_8077 0.52 -0.6
370,442 - 16445 mRNA_8077 0.65 -1.3
370,450 - 16445 mRNA_8077 0.65 -0.5
370,473 - 16445 mRNA_8077 0.67 -0.7
370,483 + 16445 mRNA_8077 0.68 -0.2
370,539 + 16445 mRNA_8077 0.72 -1.6
370,608 - 16445 mRNA_8077 0.77 -2.1
370,651 - 16445 mRNA_8077 0.80 -2.1
370,674 + 16445 mRNA_8077 0.81 -1.6
370,770 + 16445 mRNA_8077 0.88 +1.4
370,912 + -1.2
371,081 + -1.0
371,207 - -1.1
371,215 + -0.2
371,222 + -3.6
371,782 - 16446 mRNA_8078 0.61 +0.2
371,802 - 16446 mRNA_8078 0.63 -1.3
371,827 - 16446 mRNA_8078 0.65 -0.2

Or see this region's nucleotide sequence