Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8091

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16458 and 16459 are separated by 129 nucleotides16459 and 16460 are separated by 435 nucleotides mRNA_8090: 16458 - K12737 SDCCAG10 peptidyl-prolyl cis-trans isomerase SDCCAG10, at 395,084 to 397,372 16458 mRNA_8091: 16459 - K15463 RIT1 tRNA A64-2'-O-ribosylphosphate transferase, at 397,502 to 399,447 16459 mRNA_8092: 16460 - K14457 MOGAT2, MGAT2 2-acylglycerol O-acyltransferase 2, at 399,883 to 401,738 16460

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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397,444 - -2.3
398,040 - 16459 mRNA_8091 0.28 -0.7
398,556 + 16459 mRNA_8091 0.54 -1.8
398,936 + 16459 mRNA_8091 0.74 -0.5
399,361 - -0.4
399,522 + +0.1
399,540 + +0.2
399,546 + -2.4
399,787 - -1.9
399,808 - -1.9
399,815 - -2.1
399,827 + -3.0
399,828 + -1.8
399,828 - -1.0
399,835 - -0.8
399,842 + -1.4
399,949 - -0.3
400,155 - 16460 mRNA_8092 0.15 -0.2
400,282 + 16460 mRNA_8092 0.21 -2.2
400,286 + 16460 mRNA_8092 0.22 -0.9
400,405 + 16460 mRNA_8092 0.28 -1.0
400,410 - 16460 mRNA_8092 0.28 -0.1
400,413 + 16460 mRNA_8092 0.29 -1.3

Or see this region's nucleotide sequence