Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8173

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16540 and 16541 are separated by 237 nucleotides mRNA_8172: 16540 - K17592 SACS sacsin, at 590,465 to 596,519 16540 mRNA_8173: 16541 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 596,757 to 597,514 16541

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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595,787 - 16540 mRNA_8172 0.88 -2.0
595,921 - -0.5
596,404 - -2.6
596,532 + -0.5
596,941 + 16541 mRNA_8173 0.24 -1.8
597,553 + -2.7
597,555 - -1.5
597,574 + +0.3
597,705 - -1.5
597,842 - -1.8
597,852 - -2.8
597,861 + -3.0
597,869 - -1.7
597,872 + -2.4
597,900 + -0.5
597,941 + -1.3
598,203 - -2.9
598,226 - +1.0
598,345 + -0.9
598,345 + -1.8
598,345 + -1.3
598,440 + -3.6
598,452 + -0.5
598,465 - -2.2
598,471 - -2.4
598,471 - -1.9
598,481 + -1.0
598,483 + -0.4
598,493 + -0.7
598,494 - -1.9
598,498 + +1.3
598,499 + -0.9
598,501 + -2.1
598,510 - -2.2
598,514 + +2.3

Or see this region's nucleotide sequence