Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8184

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16550 and 16551 are separated by 9 nucleotides16551 and 16552 are separated by 304 nucleotides16552 and 16553 are separated by 759 nucleotides mRNA_8182: 16550 - Hypothetical Protein, at 615,324 to 615,950 16550 mRNA_8183: 16551 - Hypothetical Protein, at 615,960 to 616,439 16551 mRNA_8184: 16552 - K00988 APA1_2 ATP adenylyltransferase, at 616,744 to 618,050 16552 mRNA_8185: 16553 - K02359 EGH egghead protein (zeste-white 4 protein), at 618,810 to 622,514 16553

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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616,447 - -2.2
616,986 - 16552 mRNA_8184 0.19 -0.1
617,001 + 16552 mRNA_8184 0.20 -1.9
617,296 - 16552 mRNA_8184 0.42 -0.5
617,763 - 16552 mRNA_8184 0.78 -0.7
617,783 + 16552 mRNA_8184 0.79 -0.6
617,872 - 16552 mRNA_8184 0.86 -2.8
618,038 + -0.4
618,049 + -0.4
618,305 - -1.1
618,318 - -0.3
618,355 + +0.6
618,478 + -1.5

Or see this region's nucleotide sequence