Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8228

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16595 and 16596 are separated by 2 nucleotides16596 and 16597 are separated by 567 nucleotides mRNA_8227: 16595 - BLAST Post-SET domain protein [Cordyceps confragosa RCEF 1005], at 715,339 to 716,197 16595 mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716,200 to 719,512 16596 mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720,080 to 721,710 16597

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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715,270 - -1.1
715,272 + -1.5
715,275 - -1.8
715,276 - -3.5
715,277 + +0.0
715,283 + -2.7
715,359 + -0.6
715,376 + -1.6
715,382 - -1.7
715,384 + -1.2
715,390 - -1.1
715,397 - -1.7
715,397 + -1.2
715,399 + -0.4
715,400 + -0.5
715,406 - -0.5
715,409 + -0.1
715,409 + +0.0
715,427 + 16595 mRNA_8227 0.10 -3.2
715,428 + 16595 mRNA_8227 0.10 -3.6
715,438 - 16595 mRNA_8227 0.12 -3.0
715,514 - 16595 mRNA_8227 0.20 -0.9
715,532 - 16595 mRNA_8227 0.22 -0.7
715,552 + 16595 mRNA_8227 0.25 -0.5
715,565 + 16595 mRNA_8227 0.26 -2.7
715,569 - 16595 mRNA_8227 0.27 -1.4
715,574 + 16595 mRNA_8227 0.27 -2.7
715,578 - 16595 mRNA_8227 0.28 -0.5
715,580 - 16595 mRNA_8227 0.28 -0.9
715,584 - 16595 mRNA_8227 0.29 -3.5
715,589 + 16595 mRNA_8227 0.29 -2.1
715,602 - 16595 mRNA_8227 0.31 -0.1
715,605 + 16595 mRNA_8227 0.31 -0.9
715,609 - 16595 mRNA_8227 0.31 -2.3
715,609 + 16595 mRNA_8227 0.31 -1.2
715,609 + 16595 mRNA_8227 0.31 -0.8
715,611 + 16595 mRNA_8227 0.32 -1.5
715,614 - 16595 mRNA_8227 0.32 -0.7
715,615 + 16595 mRNA_8227 0.32 -2.3
715,615 + 16595 mRNA_8227 0.32 -0.6
715,617 + 16595 mRNA_8227 0.32 -1.0
715,619 + 16595 mRNA_8227 0.33 -0.7
715,621 + 16595 mRNA_8227 0.33 -1.9
715,621 + 16595 mRNA_8227 0.33 -0.1
715,621 + 16595 mRNA_8227 0.33 -1.3
715,622 - 16595 mRNA_8227 0.33 -1.8
715,624 + 16595 mRNA_8227 0.33 -2.1
715,634 + 16595 mRNA_8227 0.34 -1.7
715,696 + 16595 mRNA_8227 0.42 -2.1
715,699 - 16595 mRNA_8227 0.42 +0.4
715,700 + 16595 mRNA_8227 0.42 -2.1
715,701 + 16595 mRNA_8227 0.42 -0.4
715,707 + 16595 mRNA_8227 0.43 -2.6
715,708 + 16595 mRNA_8227 0.43 -0.5
715,709 + 16595 mRNA_8227 0.43 -2.0
715,710 - 16595 mRNA_8227 0.43 -0.0
715,713 - 16595 mRNA_8227 0.44 -0.8
715,725 - 16595 mRNA_8227 0.45 -2.6
715,727 + 16595 mRNA_8227 0.45 -1.1
715,730 + 16595 mRNA_8227 0.46 -0.6
715,736 + 16595 mRNA_8227 0.46 -0.7
715,791 + 16595 mRNA_8227 0.53 -1.1
715,981 - 16595 mRNA_8227 0.75 +0.9
716,747 - 16596 mRNA_8228 0.17 -3.0
716,750 - 16596 mRNA_8228 0.17 -2.1
717,185 + 16596 mRNA_8228 0.30 -0.4
718,521 - 16596 mRNA_8228 0.70 -1.7
718,810 - 16596 mRNA_8228 0.79 -0.8
719,217 - -1.3
719,536 - -1.3
719,644 - -0.4
719,645 - +0.4
719,647 - +0.7
719,647 - -2.1
719,669 + -0.4
719,800 + -2.7
719,939 + -1.9
719,939 + -1.4
720,213 - -3.5
720,218 - -1.0
720,236 - -1.5

Or see this region's nucleotide sequence