Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8241

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16608 and 16609 are separated by 179 nucleotides16609 and 16610 are separated by 299 nucleotides mRNA_8240: 16608 - K14350 AADACL2 arylacetamide deacetylase-like 2, at 740,976 to 744,696 16608 mRNA_8241: 16609 - Hypothetical Protein, at 744,876 to 746,640 16609 mRNA_8242: 16610 - KOG3319 Predicted membrane protein, at 746,940 to 748,080 16610

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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744,394 - -1.3
745,138 + 16609 mRNA_8241 0.15 -2.5
745,459 - 16609 mRNA_8241 0.33 +0.8
745,673 + 16609 mRNA_8241 0.45 -3.5
746,271 - 16609 mRNA_8241 0.79 -0.9
746,572 - -1.0
746,590 - +1.2
746,725 - -1.4
746,726 + -2.4
746,740 + -1.2
746,742 + -1.3
746,744 - -0.9
746,867 - +0.5
746,867 - -2.4
746,870 - -1.6
747,338 - 16610 mRNA_8242 0.35 -1.3

Or see this region's nucleotide sequence