Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8269

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16636 and 16637 are separated by 63 nucleotides16637 and 16638 are separated by 281 nucleotides mRNA_8268: 16636 - K11511 APITD1, CENPS, MHF1 centromere protein S, at 809,649 to 810,847 16636 mRNA_8269: 16637 - Hypothetical Protein, at 810,911 to 812,187 16637 mRNA_8270: 16638 - Hypothetical Protein, at 812,469 to 813,656 16638

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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810,061 - 16636 mRNA_8268 0.34 +0.5
810,200 - 16636 mRNA_8268 0.46 +0.3
810,215 - 16636 mRNA_8268 0.47 -0.7
810,322 - 16636 mRNA_8268 0.56 -1.4
810,338 + 16636 mRNA_8268 0.57 -4.0
810,627 - 16636 mRNA_8268 0.82 -2.0
810,645 - 16636 mRNA_8268 0.83 +0.1
810,650 - 16636 mRNA_8268 0.83 -2.4
810,918 + -0.2
811,113 + 16637 mRNA_8269 0.16 -1.9
811,968 + 16637 mRNA_8269 0.83 -0.9
812,115 + +1.6
812,277 + -1.8
812,716 + 16638 mRNA_8270 0.21 -0.7
812,826 - 16638 mRNA_8270 0.30 -0.2
813,155 + 16638 mRNA_8270 0.58 +0.2
813,173 + 16638 mRNA_8270 0.59 -2.4

Or see this region's nucleotide sequence