Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8276

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16643 and 16644 are separated by 511 nucleotides16644 and 16645 are separated by 153 nucleotides mRNA_8275: 16643 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 820,228 to 822,470 16643 mRNA_8276: 16644 - K06630 YWHAE 14-3-3 protein epsilon, at 822,982 to 824,358 16644 mRNA_8277: 16645 - Hypothetical Protein, at 824,512 to 825,100 16645

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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822,191 - 16643 mRNA_8275 0.88 -2.0
822,211 - 16643 mRNA_8275 0.88 -1.4
822,229 - 16643 mRNA_8275 0.89 -1.3
822,234 + 16643 mRNA_8275 0.89 -0.1
822,369 + -1.3
822,374 + -1.7
822,395 - -0.5
822,487 - +1.2
822,525 + -2.0
822,661 + +0.9
822,763 - -3.6
822,776 - -0.4
822,776 - -0.3
822,785 + -2.5
822,791 + +1.4
822,795 + -2.8
822,796 - -1.2
822,800 - -3.1
822,804 - -1.1
822,938 - -1.0
822,940 - -3.7
822,947 + -0.8
822,955 - -3.3
822,955 + -1.1
822,956 - -0.9
822,969 + -1.4
822,969 + +0.3
822,973 + -1.5
823,080 - -1.3
823,083 + -1.8
823,085 - -0.5
823,094 - -3.9
823,096 - -2.0
823,104 + -2.2
823,108 + -2.0
823,110 + -0.5
823,110 + -3.5
823,115 - -3.1
823,116 - -1.4
823,116 - -1.1
823,122 + 16644 mRNA_8276 0.10 -2.2
823,137 - 16644 mRNA_8276 0.11 -0.7
823,144 + 16644 mRNA_8276 0.12 -2.9
823,233 - 16644 mRNA_8276 0.18 -1.5
823,254 + 16644 mRNA_8276 0.20 -2.4
823,272 - 16644 mRNA_8276 0.21 -3.1
823,275 - 16644 mRNA_8276 0.21 +0.2
823,280 + 16644 mRNA_8276 0.22 -2.2
823,291 - 16644 mRNA_8276 0.22 -1.1
823,307 + 16644 mRNA_8276 0.24 -1.3
823,409 - 16644 mRNA_8276 0.31 -4.2
823,530 - 16644 mRNA_8276 0.40 -3.5
823,562 + 16644 mRNA_8276 0.42 -0.7
823,727 + 16644 mRNA_8276 0.54 -1.3
823,731 - 16644 mRNA_8276 0.54 -1.3
823,828 - 16644 mRNA_8276 0.61 -3.2
823,884 + 16644 mRNA_8276 0.66 -2.5
823,946 + 16644 mRNA_8276 0.70 -2.1
823,997 + 16644 mRNA_8276 0.74 -1.2
824,003 - 16644 mRNA_8276 0.74 -3.8
824,027 + 16644 mRNA_8276 0.76 -1.5
824,033 + 16644 mRNA_8276 0.76 -2.0
824,105 + 16644 mRNA_8276 0.82 -2.6
824,136 + 16644 mRNA_8276 0.84 -1.9
824,305 + -2.0
824,310 - -1.5
824,563 - -2.9
824,719 - 16645 mRNA_8277 0.35 -2.0
824,741 - 16645 mRNA_8277 0.39 -1.4
824,883 + 16645 mRNA_8277 0.63 -1.0
825,269 - -2.6
825,281 - -0.3

Or see this region's nucleotide sequence