Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8308

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16675 and 16676 are separated by 323 nucleotides16676 and 16677 are separated by 107 nucleotides mRNA_8307: 16675 - Hypothetical Protein, at 897,879 to 899,223 16675 mRNA_8308: 16676 - ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 899,547 to 900,613 16676 mRNA_8309: 16677 - K06965 PELO, DOM34, pelA protein pelota, at 900,721 to 902,755 16677

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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898,676 - 16675 mRNA_8307 0.59 -0.3
898,725 + 16675 mRNA_8307 0.63 +0.2
898,998 - 16675 mRNA_8307 0.83 +0.4
899,331 - -0.6
899,349 + +0.1
899,458 + -1.3
899,584 - -0.3
899,812 + 16676 mRNA_8308 0.25 +0.5
899,887 - 16676 mRNA_8308 0.32 -0.9
900,053 - 16676 mRNA_8308 0.47 +0.7
900,061 + 16676 mRNA_8308 0.48 -2.8
900,062 - 16676 mRNA_8308 0.48 +0.5
900,197 - 16676 mRNA_8308 0.61 -0.3
900,335 - 16676 mRNA_8308 0.74 -3.6
900,340 + 16676 mRNA_8308 0.74 -0.1
900,489 + 16676 mRNA_8308 0.88 -1.2

Or see this region's nucleotide sequence