Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8330

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16697 and 16698 are separated by 65 nucleotides mRNA_8329: 16697 - KOG0527 HMG-box transcription factor, at 950,835 to 951,817 16697 mRNA_8330: 16698 - BLAST clp1-like protein [Schizophyllum commune H4-8], at 951,883 to 952,795 16698

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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950,953 + 16697 mRNA_8329 0.12 -2.8
951,119 - 16697 mRNA_8329 0.29 +0.2
951,860 - -1.6
952,185 + 16698 mRNA_8330 0.33 -0.7
952,214 - 16698 mRNA_8330 0.36 -1.1
952,306 - 16698 mRNA_8330 0.46 -2.6
952,326 - 16698 mRNA_8330 0.49 -1.7
952,471 - 16698 mRNA_8330 0.64 -2.0
952,479 + 16698 mRNA_8330 0.65 -0.8
952,479 - 16698 mRNA_8330 0.65 -1.7
952,565 + 16698 mRNA_8330 0.75 -0.6
952,600 + 16698 mRNA_8330 0.79 -3.1
952,627 - 16698 mRNA_8330 0.81 -1.1
952,736 - -0.9
952,741 + +1.4
952,759 + -1.5
952,768 + -0.9
952,889 - -0.9
952,892 - -0.5
952,892 - -2.9
952,909 + -2.6
952,915 + -1.5
952,919 + -3.5
952,941 + -1.1
952,953 - +0.0
952,963 + -0.7
953,046 - -0.2
953,227 - +0.5
953,234 + -0.8
953,257 + -2.7
953,274 + -1.8
953,362 - -2.7
953,382 - -2.6
953,408 - -0.7
953,697 + -0.4

Or see this region's nucleotide sequence