Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8363

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16730 and 16731 are separated by 553 nucleotides16731 and 16732 are separated by 122 nucleotides mRNA_8362: 16730 - Hypothetical Protein, at 1,039,289 to 1,041,924 16730 mRNA_8363: 16731 - KOG1693 emp24/gp25L/p24 family of membrane trafficking proteins, at 1,042,478 to 1,043,371 16731 mRNA_8364: 16732 - K01488 add, ADA adenosine deaminase, at 1,043,494 to 1,044,920 16732

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,041,951 + -3.0
1,041,954 - -1.6
1,041,977 + -0.7
1,041,987 - -0.3
1,041,993 + -4.4
1,042,007 - -2.8
1,042,102 - -0.4
1,042,152 + -1.3
1,042,153 + -0.5
1,042,261 - +0.7
1,042,287 + -3.0
1,042,433 - -1.2
1,042,563 - -2.2
1,042,579 + 16731 mRNA_8363 0.11 -1.2
1,042,583 - 16731 mRNA_8363 0.12 -1.7
1,042,708 - 16731 mRNA_8363 0.26 +0.1
1,042,733 + 16731 mRNA_8363 0.29 -3.2
1,042,882 + 16731 mRNA_8363 0.45 -1.8
1,042,962 + 16731 mRNA_8363 0.54 -2.5
1,043,124 + 16731 mRNA_8363 0.72 -1.4
1,043,719 + 16732 mRNA_8364 0.16 -1.2
1,044,110 - 16732 mRNA_8364 0.43 -1.4
1,044,155 - 16732 mRNA_8364 0.46 -0.7
1,044,253 - 16732 mRNA_8364 0.53 -2.5

Or see this region's nucleotide sequence