Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8440

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16807 and 16808 are separated by 134 nucleotides16808 and 16809 are separated by 703 nucleotides mRNA_8439: 16807 - KOG4162 Predicted calmodulin-binding protein, at 1,231,325 to 1,234,854 16807 mRNA_8440: 16808 - Hypothetical Protein, at 1,234,989 to 1,235,656 16808 mRNA_8441: 16809 - K09274 K09274 HMG box factor, other, at 1,236,360 to 1,239,302 16809

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,234,932 - -2.5
1,234,951 + -2.2
1,234,957 - -2.4
1,235,566 + 16808 mRNA_8440 0.86 -0.7
1,235,671 - +0.7
1,235,696 + +3.3
1,235,867 - -1.4
1,236,129 + +0.0
1,236,276 + -3.1
1,236,294 + -1.0
1,236,309 + -0.4
1,236,343 + -0.8
1,236,605 + -0.7

Or see this region's nucleotide sequence