Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8447

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16814 and 16815 are separated by 550 nucleotides mRNA_8446: 16814 - K01115 PLD1_2 phospholipase D1/2, at 1,250,105 to 1,254,255 16814 mRNA_8447: 16815 - K15429 TRM5, TRMT5 tRNA (guanine37-N1)-methyltransferase, at 1,254,806 to 1,256,692 16815

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,253,844 - -1.5
1,253,844 + -2.8
1,253,963 + -2.1
1,254,217 - -1.2
1,254,290 + -3.3
1,254,406 - -1.5
1,254,413 + -3.1
1,254,435 + +1.1
1,254,439 - -3.0
1,254,445 + -2.2
1,254,451 + -2.8
1,254,496 + +1.1
1,254,503 - -1.3
1,254,539 - -1.4
1,254,540 - -2.6
1,254,604 - -2.9
1,254,606 - +0.6
1,254,611 - -1.4
1,254,626 - -0.9
1,254,627 - +0.2
1,254,632 - +0.5
1,254,745 + -1.7
1,254,761 + -2.7
1,254,764 + -0.7
1,254,778 + -0.4
1,256,793 + -1.8
1,256,795 + -0.9
1,256,799 - +0.5
1,256,800 + -1.6
1,256,800 - -2.2
1,256,815 + +0.3
1,256,820 + -0.3
1,256,822 + -1.7
1,256,961 - -2.7
1,256,961 - -2.2
1,256,986 + -3.1
1,257,103 + +1.2
1,257,108 + -3.4
1,257,144 + -1.2
1,257,152 - -3.2
1,257,299 - -2.9
1,257,394 - -1.9
1,257,401 - -0.9
1,257,404 - -0.4
1,257,407 - -0.6
1,257,415 + -1.9
1,257,427 + -0.7
1,257,455 - -2.2
1,257,478 - -3.7
1,257,498 - -2.7
1,257,508 + -1.3
1,257,508 - -0.4
1,257,516 - -2.4
1,257,534 - +0.0
1,257,535 + -1.5
1,257,540 + -4.8
1,257,546 + -1.6
1,257,563 - -0.3
1,257,578 - -1.6
1,257,630 + -1.3
1,257,649 + +0.9

Or see this region's nucleotide sequence