Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8461

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 16828 and 16829 are separated by 305 nucleotides16829 and 16830 are separated by 403 nucleotides mRNA_8460: 16828 - KOG0527 HMG-box transcription factor, at 1,287,256 to 1,290,060 16828 mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1,290,366 to 1,291,802 16829 mRNA_8462: 16830 - Hypothetical Protein, at 1,292,206 to 1,292,868 16830

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,289,479 + 16828 mRNA_8460 0.79 -1.4
1,289,589 + 16828 mRNA_8460 0.83 -3.6
1,289,670 - 16828 mRNA_8460 0.86 +0.1
1,290,149 - -1.3
1,290,164 - -0.8
1,290,357 - +0.0
1,290,376 + +0.0
1,290,440 - -0.3
1,290,512 + 16829 mRNA_8461 0.10 -0.3
1,290,615 + 16829 mRNA_8461 0.17 -1.2
1,290,794 - 16829 mRNA_8461 0.30 -1.0
1,290,814 - 16829 mRNA_8461 0.31 -1.7
1,291,022 - 16829 mRNA_8461 0.46 -0.5
1,291,025 + 16829 mRNA_8461 0.46 -2.9
1,291,049 + 16829 mRNA_8461 0.48 -1.2
1,291,166 + 16829 mRNA_8461 0.56 -2.8
1,291,439 - 16829 mRNA_8461 0.75 -1.1
1,291,619 - 16829 mRNA_8461 0.87 +0.6
1,291,776 + +1.2
1,291,797 + -1.7
1,291,837 - -2.2
1,291,864 - -0.9
1,291,891 + +0.1
1,292,018 + -4.2
1,292,026 + -0.6
1,292,030 - -0.1
1,292,031 + -0.4
1,292,179 - -0.6
1,292,184 + -0.0
1,292,188 - -3.0
1,292,193 - -0.7
1,292,196 + -0.8
1,292,341 + 16830 mRNA_8462 0.20 -2.1
1,292,349 - 16830 mRNA_8462 0.22 -2.6
1,292,351 - 16830 mRNA_8462 0.22 -1.4
1,292,351 - 16830 mRNA_8462 0.22 -0.9
1,292,351 - 16830 mRNA_8462 0.22 -2.4
1,292,355 - 16830 mRNA_8462 0.22 -0.7
1,292,361 + 16830 mRNA_8462 0.23 -1.4
1,292,376 + 16830 mRNA_8462 0.26 -0.3
1,292,457 + 16830 mRNA_8462 0.38 -3.5
1,292,493 - 16830 mRNA_8462 0.43 +0.7
1,292,500 - 16830 mRNA_8462 0.44 -0.7
1,292,501 + 16830 mRNA_8462 0.44 +1.0
1,292,512 + 16830 mRNA_8462 0.46 -1.6
1,292,635 - 16830 mRNA_8462 0.65 +1.1
1,292,639 - 16830 mRNA_8462 0.65 -2.0
1,292,659 + 16830 mRNA_8462 0.68 -1.4

Or see this region's nucleotide sequence