Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_14

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_14: 8382 - K07199 PRKAB 5'-AMP-activated protein kinase, regulatory beta subunit, at 36,682 to 38,243 8382

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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35,824 - -1.8
35,850 + -0.7
36,208 - +1.4
36,561 + +2.2
36,572 + -3.6
36,584 - -1.1
37,138 + 8382 mRNA_14 0.29 -0.0
37,280 - 8382 mRNA_14 0.38 -3.6
37,529 - 8382 mRNA_14 0.54 -1.0
37,562 + 8382 mRNA_14 0.56 -3.1
37,822 - 8382 mRNA_14 0.73 +0.9
38,153 + -3.1
38,294 - -3.3
38,429 - -1.4
38,433 - -1.0
38,535 + -1.8
38,596 + -2.8
38,601 - -2.0
38,607 - -1.9
38,620 - -1.9

Or see this region's nucleotide sequence