Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_15

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8383 and 8384 are separated by 242 nucleotides mRNA_15: 8383 - K02321 POLA2 DNA polymerase alpha subunit B, at 39,313 to 41,292 8383 mRNA_16: 8384 - K03407 cheA two-component system, chemotaxis family, sensor kinase CheA, at 41,535 to 45,882 8384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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38,429 - -1.4
38,433 - -1.0
38,535 + -1.8
38,596 + -2.8
38,601 - -2.0
38,607 - -1.9
38,620 - -1.9
41,523 - -1.3
41,618 - +0.3
41,620 + +0.8
41,697 - -1.3
41,830 + -2.3
41,854 - -1.4
41,863 + -2.4
42,189 + 8384 mRNA_16 0.15 -1.4

Or see this region's nucleotide sequence