Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_55

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8422 and 8423 are separated by 108 nucleotides8423 and 8424 are separated by 135 nucleotides mRNA_54: 8422 - KOG1505 Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases, at 128,047 to 129,356 8422 mRNA_55: 8423 - HMMPfam-Endonuclease/Exonuclease/phosphatase family-PF03372,SUPERFAMILY--SSF56219, at 129,465 to 130,938 8423 mRNA_56: 8424 - K09499 CCT7 T-complex protein 1 subunit eta, at 131,074 to 133,280 8424

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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128,484 - 8422 mRNA_54 0.33 +0.0
128,488 - 8422 mRNA_54 0.34 -1.1
128,618 - 8422 mRNA_54 0.44 -2.0
128,981 + 8422 mRNA_54 0.71 -3.9
129,214 + 8422 mRNA_54 0.89 -2.4
129,267 - +0.2
129,346 - -2.8
129,406 + +0.2
130,359 - 8423 mRNA_55 0.61 -1.1
130,634 - 8423 mRNA_55 0.79 -0.9
130,821 + -3.2
130,845 - +0.1
130,982 - -1.0
130,984 - -1.8
130,986 + -3.2
130,986 - -1.8

Or see this region's nucleotide sequence