Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_71

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8438 and 8439 are separated by 490 nucleotides8439 and 8440 are separated by 214 nucleotides mRNA_70: 8438 - HMMPfam-Membrane-associating domain-PF01284, at 166,029 to 167,085 8438 mRNA_71: 8439 - HMMPfam-YABBY protein-PF04690,SUPERFAMILY--SSF47095, at 167,576 to 168,117 8439 mRNA_72: 8440 - BLAST apses-domain-containing protein [Moesziomyces ant..., at 168,332 to 168,818 8440

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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167,233 - -1.5
167,246 + -0.3
167,302 + -2.8
167,411 + -4.5
167,413 + -0.8
168,130 - -4.4
168,149 + +0.4
168,153 - -1.3
168,297 - -0.7
168,458 + 8440 mRNA_72 0.26 +0.5
168,476 + 8440 mRNA_72 0.30 -1.6
168,586 + 8440 mRNA_72 0.52 -0.9
168,596 + 8440 mRNA_72 0.54 -1.7
168,732 + 8440 mRNA_72 0.82 -4.0
168,735 + 8440 mRNA_72 0.83 -0.1
168,789 + -1.0
168,846 + -0.3
168,861 - -2.4
168,864 - +0.3
168,906 + -1.0
168,935 - -1.0

Or see this region's nucleotide sequence