Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_92

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8459 and 8460 are separated by 478 nucleotides mRNA_91: 8459 - HMMPfam-Domain of unknown function (DUF4604)-PF15377, at 216,175 to 216,894 8459 mRNA_92: 8460 - KOG2914 Predicted haloacid-halidohydrolase and related hydrolases, at 217,373 to 218,871 8460

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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216,567 - 8459 mRNA_91 0.54 -3.3
216,580 + 8459 mRNA_91 0.56 -1.4
216,718 - 8459 mRNA_91 0.75 -1.3
216,739 - 8459 mRNA_91 0.78 -0.9
217,761 + 8460 mRNA_92 0.26 -2.5
218,475 + 8460 mRNA_92 0.74 +1.1
218,492 - 8460 mRNA_92 0.75 -1.6
218,620 + 8460 mRNA_92 0.83 -0.3
218,765 - -1.9
219,036 + -0.3
219,050 - -2.4
219,077 + -0.1
219,109 + -1.9
219,176 + -2.7
219,207 + +0.1
219,221 - -2.9
219,225 + -1.7
219,234 + -1.0
219,236 + -0.6
219,244 + -2.1
219,245 - -2.8
219,250 + -0.5
219,252 + -0.8
219,255 - -1.2
219,263 - -3.2
219,275 + -0.8
219,278 - -1.4
219,287 - -1.1
219,294 - -2.0
219,393 + -2.2
219,399 - -0.8
219,406 - -1.8
219,408 - -0.7
219,508 - -1.2
219,529 + -1.5
219,532 + -1.1
219,542 - -0.1
219,546 - -0.9
219,547 + -2.7
219,668 - -0.4
219,669 - -2.5
219,672 + -1.2

Or see this region's nucleotide sequence