Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_152

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8519 and 8520 are separated by 246 nucleotides mRNA_151: 8519 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 379,065 to 379,994 8519 mRNA_152: 8520 - BLAST Midasin [Pteropus alecto], at 380,241 to 381,290 8520

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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379,268 - 8519 mRNA_151 0.22 -2.4
379,365 - 8519 mRNA_151 0.32 -2.9
379,553 - 8519 mRNA_151 0.52 -4.3
379,586 + 8519 mRNA_151 0.56 -2.0
379,596 - 8519 mRNA_151 0.57 -1.2
379,687 + 8519 mRNA_151 0.67 -1.6
379,998 + -2.7
380,264 + -0.1
380,274 + -0.8
380,418 - 8520 mRNA_152 0.17 -0.2
380,443 - 8520 mRNA_152 0.19 -1.1
380,443 + 8520 mRNA_152 0.19 -0.4
380,580 + 8520 mRNA_152 0.32 -1.8
380,719 + 8520 mRNA_152 0.46 -2.4
380,728 - 8520 mRNA_152 0.46 -0.5
380,732 - 8520 mRNA_152 0.47 -1.5
380,735 + 8520 mRNA_152 0.47 -1.8
380,736 + 8520 mRNA_152 0.47 +0.3
380,756 + 8520 mRNA_152 0.49 +1.3
380,760 - 8520 mRNA_152 0.49 -0.5
380,861 + 8520 mRNA_152 0.59 -1.0
380,878 + 8520 mRNA_152 0.61 -1.3
380,879 + 8520 mRNA_152 0.61 -1.8
380,885 - 8520 mRNA_152 0.61 -0.9
380,885 - 8520 mRNA_152 0.61 -2.6
380,887 - 8520 mRNA_152 0.62 -0.6
380,887 - 8520 mRNA_152 0.62 -1.1
380,889 - 8520 mRNA_152 0.62 -0.2
380,893 - 8520 mRNA_152 0.62 -3.7
380,903 - 8520 mRNA_152 0.63 -1.1
380,904 + 8520 mRNA_152 0.63 +1.2
380,904 + 8520 mRNA_152 0.63 -3.5
380,908 - 8520 mRNA_152 0.64 -0.3
380,908 + 8520 mRNA_152 0.64 -1.5
380,911 - 8520 mRNA_152 0.64 -2.3
380,912 + 8520 mRNA_152 0.64 -0.6
380,918 - 8520 mRNA_152 0.64 -0.9
380,925 - 8520 mRNA_152 0.65 -2.3
380,926 + 8520 mRNA_152 0.65 +0.5
380,952 + 8520 mRNA_152 0.68 +0.4
380,994 - 8520 mRNA_152 0.72 -2.6
381,041 - 8520 mRNA_152 0.76 -0.6
381,050 - 8520 mRNA_152 0.77 +0.2
381,055 + 8520 mRNA_152 0.78 -2.5
381,058 + 8520 mRNA_152 0.78 -2.5
381,111 - 8520 mRNA_152 0.83 -1.6
381,198 - -1.4
381,199 - -0.3
381,437 + -3.8
381,616 - -3.2
382,216 + -3.2

Or see this region's nucleotide sequence