Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_177

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8544 and 8545 are separated by 171 nucleotides8545 and 8546 are separated by 383 nucleotides mRNA_176: 8544 - HMMPfam-Alpha/beta hydrolase family-PF12697,SUPERFAMILY--SSF53474, at 432,530 to 433,945 8544 mRNA_177: 8545 - KOG4096 Uncharacterized conserved protein, at 434,117 to 434,779 8545 mRNA_178: 8546 - K00974 cca tRNA nucleotidyltransferase (CCA-adding enzyme), at 435,163 to 437,748 8546

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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433,126 - 8544 mRNA_176 0.42 -2.4
434,612 + 8545 mRNA_177 0.75 +0.5
434,620 + 8545 mRNA_177 0.76 -2.8
434,733 - -0.1
434,745 - -1.9
434,871 + -3.2
434,885 - -0.1
434,888 + -1.2
435,043 - -0.9
435,049 - -2.4
435,060 - -0.8

Or see this region's nucleotide sequence