Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_191

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8558 and 8559 are separated by 105 nucleotides8559 and 8560 are separated by 221 nucleotides mRNA_190: 8558 - K09526 DNAJC6 DnaJ homolog subfamily C member 6, at 463,737 to 466,686 8558 mRNA_191: 8559 - K18588 COQ10 coenzyme Q-binding protein COQ10, at 466,792 to 467,615 8559 mRNA_192: 8560 - HMMPfam-SUR7/PalI family-PF06687, at 467,837 to 468,649 8560

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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467,906 - -0.9
468,228 + 8560 mRNA_192 0.48 -2.0
468,368 + 8560 mRNA_192 0.65 -2.5
468,479 - 8560 mRNA_192 0.79 -1.0
468,533 + 8560 mRNA_192 0.86 -0.8

Or see this region's nucleotide sequence