Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_280

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8647 and 8648 are separated by 434 nucleotides mRNA_279: 8647 - K02908 RP-L30e, RPL30 large subunit ribosomal protein L30e, at 665,902 to 666,990 8647 mRNA_280: 8648 - Hypothetical Protein, at 667,425 to 668,296 8648

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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667,562 - 8648 mRNA_280 0.16 -2.9
667,620 - 8648 mRNA_280 0.22 -1.8
667,808 - 8648 mRNA_280 0.44 -0.6
667,845 + 8648 mRNA_280 0.48 -3.4
667,915 + 8648 mRNA_280 0.56 -1.2
667,946 - 8648 mRNA_280 0.60 -1.4
667,959 - 8648 mRNA_280 0.61 -2.7
668,114 - 8648 mRNA_280 0.79 -1.9
668,233 - +0.1
668,236 - -3.1
668,242 + -1.0
668,262 + -3.5
668,298 + -1.1
668,386 + -0.1
668,462 - -2.0
668,483 - -0.4
668,499 + -0.5
668,499 + -3.6
668,509 + +0.5
668,522 + -1.2
668,530 - -0.9
668,548 - +0.2
668,553 - -3.1
668,577 + -0.0
668,640 + -1.9
668,651 + -3.2
668,658 + -2.4
668,679 + -0.7
668,955 + -1.8
669,012 - -0.4
669,015 - -0.4

Or see this region's nucleotide sequence