Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_310

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8677 and 8678 are separated by 220 nucleotides mRNA_309: 8677 - K00643 E2.3.1.37, ALAS 5-aminolevulinate synthase, at 732,179 to 734,206 8677 mRNA_310: 8678 - K00626 E2.3.1.9, atoB acetyl-CoA C-acetyltransferase, at 734,427 to 736,325 8678

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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734,170 + -1.0
734,210 + +0.6
734,304 + +1.9
734,319 - -1.0
734,319 + +0.2
734,329 - -0.7
734,338 + -0.5
734,339 + -1.6
734,339 - -1.0
734,355 + -0.4
734,359 + -0.1
734,360 + -0.1
734,368 - +0.1
734,460 + -2.8
734,491 + +0.7
734,501 - -2.1
734,503 + -2.5
734,504 - -1.4
734,514 - -2.5
734,514 + -2.1
734,519 + -0.3
735,101 + 8678 mRNA_310 0.35 -0.8
736,360 - +0.1
736,621 + -0.7
736,621 - -0.5
736,662 - -2.4
736,747 + +1.6
736,766 + +0.8
736,936 - -0.0
736,988 + -1.4

Or see this region's nucleotide sequence