Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_324

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8691 and 8692 are separated by 647 nucleotides8692 and 8693 are separated by 306 nucleotides mRNA_323: 8691 - Hypothetical Protein, at 766,259 to 767,210 8691 mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767,858 to 770,027 8692 mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770,334 to 776,057 8693

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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766,950 - 8691 mRNA_323 0.73 -1.4
767,067 - 8691 mRNA_323 0.85 +0.2
767,149 - +0.7
767,181 + -3.5
767,238 - +0.2
767,288 - -3.0
767,324 + -2.2
767,333 + -1.5
767,337 + -1.6
767,361 - -3.0
767,411 + -2.2
767,506 - -2.2
767,511 + -1.7
767,530 - -0.6
767,530 - -2.9
767,537 + -2.7
767,538 + -0.7
767,557 + -3.0
767,564 - +0.5
767,577 + -1.3
767,585 + -0.3
767,594 + +0.4
767,603 + -0.1
767,653 - -1.8
767,658 - -3.7
767,664 - -0.0
767,664 - +0.2
767,680 + -1.5
767,685 + +0.1
767,784 + -0.5
767,821 - -1.9
767,823 + +0.5
767,839 + -0.3
767,865 + -1.1
767,964 - -2.7
768,124 + 8692 mRNA_324 0.12 -0.7
768,128 + 8692 mRNA_324 0.12 -1.5
768,253 - 8692 mRNA_324 0.18 +0.1
768,712 + 8692 mRNA_324 0.39 -0.6
769,122 - 8692 mRNA_324 0.58 -3.3
770,322 + -0.1
770,330 - +0.2
770,456 + -0.9
770,920 + 8693 mRNA_325 0.10 -0.4

Or see this region's nucleotide sequence