Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_331

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8699 and 8700 are separated by 349 nucleotides mRNA_331: 8699 - K03940 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, at 786,269 to 787,745 8699 mRNA_332: 8700 - HMMPfam-DSS1/SEM1 family-PF05160, at 788,095 to 788,775 8700

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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785,366 - -0.6
785,381 + -2.2
785,384 - -2.9
785,412 + -0.6
785,414 + -4.0
785,550 + -3.0
785,553 + -1.0
785,556 - +0.2
785,579 - -1.1
785,592 - +0.1
785,687 - +0.3
785,719 + -0.6
785,866 + -0.8
785,999 + -4.1
786,016 + -3.1
786,129 - +1.9
786,138 + -1.1
786,168 + +1.1
786,243 - -2.0
786,263 + -0.7
786,274 - -0.4
786,276 - -1.4
786,278 + -0.2
786,295 - -0.4
786,295 - -2.7
786,296 - -1.4
786,300 + -3.0
786,302 + -2.9
786,307 - -2.4
786,309 - -2.2
786,315 - +1.2
786,318 - +0.1
786,327 + -2.1
786,912 - 8699 mRNA_331 0.44 -1.9
787,340 - 8699 mRNA_331 0.73 -0.4
787,728 - +0.4
787,787 + -0.7
787,891 + -0.3
787,904 + -0.3
787,928 + -2.5
787,934 + -3.3
788,078 - -2.7
788,078 + -1.8

Or see this region's nucleotide sequence