Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_339

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8706 and 8707 overlap by 4 nucleotides8707 and 8708 are separated by 462 nucleotides mRNA_338: 8706 - Hypothetical Protein, at 798,129 to 798,620 8706 mRNA_339: 8707 - K01693 hisB imidazoleglycerol-phosphate dehydratase, at 798,617 to 799,510 8707 mRNA_340: 8708 - KOG1271 Methyltransferases, at 799,973 to 801,137 8708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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797,652 - -0.6
797,690 - -0.1
797,985 - -1.2
798,133 + -1.1
798,138 - -0.8
798,270 + 8706 mRNA_338 0.29 -3.0
798,291 + 8706 mRNA_338 0.33 +0.2
798,504 - 8706 mRNA_338 0.76 +0.7
799,536 + -2.4
799,555 - -2.0
799,569 - -1.1
799,575 + -0.8
799,705 - -1.2
799,719 - -0.5
799,861 - -1.6
799,867 - -2.2
800,012 - -1.8
800,012 - -1.4
800,292 + 8708 mRNA_340 0.27 -2.5
800,329 - 8708 mRNA_340 0.31 -1.5
800,348 + 8708 mRNA_340 0.32 +2.3

Or see this region's nucleotide sequence