Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_348

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8715 and 8716 are separated by 216 nucleotides8716 and 8717 are separated by 912 nucleotides mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812,263 to 813,594 8715 mRNA_348: 8716 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 813,811 to 815,656 8716 mRNA_349: 8717 - K12825 SF3A1, SAP114 splicing factor 3A subunit 1, at 816,569 to 819,001 8717

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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812,917 - 8715 mRNA_347 0.49 -2.1
812,959 - 8715 mRNA_347 0.52 -1.6
812,966 + 8715 mRNA_347 0.53 -0.7
813,126 + 8715 mRNA_347 0.65 -1.2
813,181 + 8715 mRNA_347 0.69 -1.2
813,668 - -0.8
813,707 - -0.6
813,791 - -3.0
813,942 - -1.4
814,248 + 8716 mRNA_348 0.24 -0.9
814,377 - 8716 mRNA_348 0.31 -1.1
814,392 - 8716 mRNA_348 0.31 -0.0
814,521 + 8716 mRNA_348 0.38 -2.0
814,542 - 8716 mRNA_348 0.40 -1.6
814,801 - 8716 mRNA_348 0.54 -0.6
814,853 + 8716 mRNA_348 0.56 -2.4
815,117 + 8716 mRNA_348 0.71 +0.2
815,203 + 8716 mRNA_348 0.75 -1.4
815,273 + 8716 mRNA_348 0.79 -2.5
815,283 + 8716 mRNA_348 0.80 -1.4
815,395 - 8716 mRNA_348 0.86 -2.9
815,683 + -1.7
815,694 + -2.8
815,704 - -2.3
815,744 + -1.5
815,811 + -0.1
815,815 + -1.1
815,828 + -2.7
815,844 + +0.0
815,870 - -1.3
815,893 + -0.5
815,905 + -3.1
815,995 + +0.7
816,011 + -1.9
816,012 + -0.2
816,022 + -2.3
816,024 - +0.9
816,030 - -1.0
816,035 + -1.8
816,048 + -3.0
816,069 + -1.4
816,112 - -2.1
816,118 - -1.0
816,122 - -1.2
816,137 + -2.3
816,144 + -3.7
816,159 - +0.0
816,165 - +0.8
816,166 - +0.8
816,167 - -0.5
816,176 + -1.7
816,177 + -2.1
816,180 + -0.2
816,190 + -0.9
816,193 + -1.9
816,205 + -1.9
816,365 + -1.9
816,366 + +0.0
816,368 + +0.8
816,381 + -1.6

Or see this region's nucleotide sequence