Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_349

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8716 and 8717 are separated by 912 nucleotides8717 and 8718 are separated by 199 nucleotides mRNA_348: 8716 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 813,811 to 815,656 8716 mRNA_349: 8717 - K12825 SF3A1, SAP114 splicing factor 3A subunit 1, at 816,569 to 819,001 8717 mRNA_350: 8718 - K17439 MRPL35 large subunit ribosomal protein L35, at 819,201 to 820,840 8718

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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815,683 + -1.7
815,694 + -2.8
815,704 - -2.3
815,744 + -1.5
815,811 + -0.1
815,815 + -1.1
815,828 + -2.7
815,844 + +0.0
815,870 - -1.3
815,893 + -0.5
815,905 + -3.1
815,995 + +0.7
816,011 + -1.9
816,012 + -0.2
816,022 + -2.3
816,024 - +0.9
816,030 - -1.0
816,035 + -1.8
816,048 + -3.0
816,069 + -1.4
816,112 - -2.1
816,118 - -1.0
816,122 - -1.2
816,137 + -2.3
816,144 + -3.7
816,159 - +0.0
816,165 - +0.8
816,166 - +0.8
816,167 - -0.5
816,176 + -1.7
816,177 + -2.1
816,180 + -0.2
816,190 + -0.9
816,193 + -1.9
816,205 + -1.9
816,365 + -1.9
816,366 + +0.0
816,368 + +0.8
816,381 + -1.6
819,105 + -1.0
819,237 - -2.8

Or see this region's nucleotide sequence