Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_393

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8760 and 8761 are separated by 190 nucleotides8761 and 8762 are separated by 179 nucleotides mRNA_392: 8760 - K12834 PHF5A PHD finger-like domain-containing protein 5A, at 914,908 to 915,580 8760 mRNA_393: 8761 - Hypothetical Protein, at 915,771 to 916,536 8761 mRNA_394: 8762 - KOG0714 Molecular chaperone (DnaJ superfamily), at 916,716 to 918,157 8762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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915,589 + -1.7
915,610 + -1.2
915,617 + -0.2
915,618 - -3.3
915,623 + -0.4
915,752 - -1.0
915,775 + -0.7
916,040 - 8761 mRNA_393 0.35 -2.1
916,347 + 8761 mRNA_393 0.75 +0.4
916,516 + -0.4
917,077 - 8762 mRNA_394 0.25 -1.5
917,406 - 8762 mRNA_394 0.48 +0.1
917,418 - 8762 mRNA_394 0.49 +0.6

Or see this region's nucleotide sequence