Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_410

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8777 and 8778 are separated by 611 nucleotides8778 and 8779 are separated by 610 nucleotides mRNA_409: 8777 - K00667 FAS2 fatty acid synthase subunit alpha, fungi type, at 950,698 to 960,325 8777 mRNA_410: 8778 - HMMPfam-WD domain, G-beta repeat-PF00400, at 960,937 to 962,253 8778 mRNA_411: 8779 - K12862 PLRG1, PRL1, PRP46 pleiotropic regulator 1, at 962,864 to 964,890 8779

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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961,595 - 8778 mRNA_410 0.50 +0.4
961,800 + 8778 mRNA_410 0.66 -1.8
961,880 + 8778 mRNA_410 0.72 -1.4
962,012 - 8778 mRNA_410 0.82 -0.0

Or see this region's nucleotide sequence