Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_429

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8796 and 8797 are separated by 325 nucleotides8797 and 8798 are separated by 289 nucleotides mRNA_428: 8796 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 995,646 to 996,920 8796 mRNA_429: 8797 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 997,246 to 998,562 8797 mRNA_430: 8798 - K13704 ABHD12 abhydrolase domain-containing protein 12, at 998,852 to 1,000,348 8798

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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996,424 + 8796 mRNA_428 0.61 -2.1
996,564 - 8796 mRNA_428 0.72 +0.8
996,599 - 8796 mRNA_428 0.75 -0.8
996,996 - -0.6
997,008 + +0.2
997,016 + -4.1
997,041 + -1.2
997,075 + -2.2
997,180 + -0.5
997,187 - -1.8
997,898 - 8797 mRNA_429 0.50 -0.8
998,776 - +0.1
998,799 + -1.7

Or see this region's nucleotide sequence