Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_431

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8798 and 8799 are separated by 394 nucleotides8799 and 8800 are separated by 248 nucleotides mRNA_430: 8798 - K13704 ABHD12 abhydrolase domain-containing protein 12, at 998,852 to 1,000,348 8798 mRNA_431: 8799 - HMMPfam-SH3-binding, glutamic acid-rich protein-PF04908,ProSiteProfiles-Glutaredoxin domain profile.-PS51354,SUPERFAMILY--SSF52833, at 1,000,743 to 1,002,192 8799 mRNA_432: 8800 - KOG4546 Peroxisomal biogenesis protein (peroxin 16), at 1,002,441 to 1,004,033 8800

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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999,987 + 8798 mRNA_430 0.76 -1.6
1,000,157 + 8798 mRNA_430 0.87 +0.2
1,000,272 + -2.6
1,000,371 - -2.4
1,000,424 - -1.4
1,000,428 + -0.9
1,000,709 + -1.1
1,000,877 + -1.5
1,001,042 + 8799 mRNA_431 0.21 -0.4
1,001,207 + 8799 mRNA_431 0.32 -0.4
1,001,727 - 8799 mRNA_431 0.68 -0.1
1,002,160 + -0.3
1,002,160 - -0.2
1,002,171 + -1.6
1,002,173 - -0.7
1,002,370 + +0.1

Or see this region's nucleotide sequence