Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_446

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8813 and 8814 are separated by 856 nucleotides mRNA_445: 8813 - K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B), at 1,034,694 to 1,036,039 8813 mRNA_446: 8814 - K00254 DHODH, pyrD dihydroorotate dehydrogenase, at 1,036,896 to 1,038,649 8814

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,036,023 - -0.3
1,036,161 + -0.0
1,036,178 + -1.0
1,036,192 - +0.1
1,036,325 - -2.3
1,036,334 - +0.1
1,036,627 - -3.1
1,038,657 - -1.2
1,038,660 - -0.4
1,038,668 + -0.4
1,038,670 + -2.8
1,038,670 - -0.3
1,038,688 + -1.1
1,038,777 - -2.1
1,038,781 - -1.1
1,038,782 + -1.8
1,038,784 + +0.4
1,038,786 + -1.2
1,038,792 - -0.4
1,038,796 - -1.7
1,038,796 + -0.6
1,038,799 + -0.6
1,038,799 + -0.5
1,038,807 - -0.9
1,038,808 + -1.0
1,038,815 - +0.3
1,038,935 + -3.3
1,039,053 - -2.9
1,039,088 + -1.1
1,039,356 - -1.4

Or see this region's nucleotide sequence