Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_472

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8839 and 8840 are separated by 48 nucleotides8840 and 8841 are separated by 237 nucleotides mRNA_471: 8839 - Hypothetical Protein, at 1,096,183 to 1,097,842 8839 mRNA_472: 8840 - KOG0987 DNA helicase PIF1/RRM3, at 1,097,891 to 1,099,308 8840 mRNA_473: 8841 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,099,546 to 1,101,190 8841

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,097,099 - 8839 mRNA_471 0.55 -0.5
1,097,462 + 8839 mRNA_471 0.77 -2.8
1,097,741 - -0.1
1,097,904 + -3.1

Or see this region's nucleotide sequence