Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_563

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8930 and 8931 are separated by 198 nucleotides8931 and 8932 are separated by 88 nucleotides mRNA_562: 8930 - HMMPfam-HPC2 and ubinuclein domain-PF08729, at 1,346,639 to 1,349,486 8930 mRNA_563: 8931 - K05287 PIGF phosphatidylinositol glycan, class F, at 1,349,685 to 1,350,957 8931 mRNA_564: 8932 - K01230 MAN1 mannosyl-oligosaccharide alpha-1,2-mannosidase, at 1,351,046 to 1,353,534 8932

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,349,065 - 8930 mRNA_562 0.85 +0.2
1,349,337 - -1.8
1,349,618 - -2.1
1,349,623 - -2.0
1,349,628 - -0.4
1,349,642 - -1.1
1,349,658 + -1.4
1,350,225 - 8931 mRNA_563 0.42 -4.3
1,350,536 - 8931 mRNA_563 0.67 +0.8
1,350,710 + 8931 mRNA_563 0.81 -2.2
1,350,819 + 8931 mRNA_563 0.89 +0.9
1,351,372 + 8932 mRNA_564 0.13 -1.1
1,351,677 - 8932 mRNA_564 0.25 +1.4
1,351,820 - 8932 mRNA_564 0.31 -2.8
1,351,827 - 8932 mRNA_564 0.31 -1.6
1,351,836 + 8932 mRNA_564 0.32 -3.4
1,351,837 + 8932 mRNA_564 0.32 -0.9
1,351,837 - 8932 mRNA_564 0.32 -1.4

Or see this region's nucleotide sequence