Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_576

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8943 and 8944 are separated by 286 nucleotides8944 and 8945 are separated by 176 nucleotides mRNA_575: 8943 - K00940 ndk, NME nucleoside-diphosphate kinase, at 1,378,684 to 1,379,466 8943 mRNA_576: 8944 - K20182 VPS33 vacuolar protein sorting-associated protein 33, at 1,379,753 to 1,382,507 8944 mRNA_577: 8945 - Hypothetical Protein, at 1,382,684 to 1,384,433 8945

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,378,801 - 8943 mRNA_575 0.15 -2.0
1,379,431 + +0.5
1,379,527 + -0.0
1,379,685 - -0.1
1,379,804 - -2.3
1,380,101 + 8944 mRNA_576 0.13 -3.5
1,380,222 - 8944 mRNA_576 0.17 -3.1
1,382,650 + -2.7
1,382,736 + -1.1

Or see this region's nucleotide sequence