Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_587

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8954 and 8955 are separated by 348 nucleotides8955 and 8956 are separated by 802 nucleotides mRNA_586: 8954 - K20291 COG4, COD1 conserved oligomeric Golgi complex subunit 4, at 1,398,655 to 1,401,525 8954 mRNA_587: 8955 - K10846 ERCC5, XPG, RAD2 DNA excision repair protein ERCC-5, at 1,401,874 to 1,405,590 8955 mRNA_588: 8956 - K12609 CAF120 CCR4-NOT transcriptional complex subunit CAF120, at 1,406,393 to 1,408,614 8956

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,401,174 + 8954 mRNA_586 0.88 -2.9
1,401,918 - -0.7
1,401,997 + -1.8
1,402,056 + -1.7
1,402,075 + -1.4
1,402,517 + 8955 mRNA_587 0.17 -1.8
1,402,609 + 8955 mRNA_587 0.20 -2.0
1,402,885 - 8955 mRNA_587 0.27 -0.6
1,402,963 + 8955 mRNA_587 0.29 -0.6
1,403,092 - 8955 mRNA_587 0.33 -2.1
1,403,145 + 8955 mRNA_587 0.34 -3.3
1,403,261 + 8955 mRNA_587 0.37 -0.4
1,403,619 - 8955 mRNA_587 0.47 -1.4
1,404,820 + 8955 mRNA_587 0.79 +0.3
1,404,848 + 8955 mRNA_587 0.80 -0.6
1,405,113 + 8955 mRNA_587 0.87 -0.5
1,405,280 + -2.6
1,405,584 - -2.1
1,405,596 - -1.2
1,406,318 + -2.9
1,406,337 + -1.1
1,406,459 - -2.4
1,406,477 - -1.0
1,406,487 + -1.1

Or see this region's nucleotide sequence