Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_607

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8974 and 8975 are separated by 269 nucleotides mRNA_606: 8974 - K06867 K06867 uncharacterized protein, at 1,457,249 to 1,458,122 8974 mRNA_607: 8975 - K00140 mmsA, iolA, ALDH6A1 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase, at 1,458,392 to 1,460,964 8975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,458,503 - -0.6
1,458,648 + -3.9
1,458,787 + 8975 mRNA_607 0.15 -1.6
1,458,792 - 8975 mRNA_607 0.16 -0.2
1,458,967 + 8975 mRNA_607 0.22 -1.9
1,459,071 + 8975 mRNA_607 0.26 -0.7
1,459,360 - 8975 mRNA_607 0.38 -2.1
1,459,816 - 8975 mRNA_607 0.55 -1.6
1,459,834 + 8975 mRNA_607 0.56 -0.3
1,459,836 + 8975 mRNA_607 0.56 -2.0
1,460,117 - 8975 mRNA_607 0.67 -1.2
1,460,553 - 8975 mRNA_607 0.84 -4.2
1,460,726 + -1.6
1,460,844 - -1.1
1,460,845 - -1.6
1,460,850 + -3.1
1,460,855 + -1.2
1,460,877 + -2.3
1,460,880 - -1.6
1,460,999 + -2.7
1,461,001 + -0.9
1,461,002 - -3.5
1,461,004 - -0.3
1,461,006 - -2.1
1,461,007 - -2.0
1,461,008 - -1.6
1,461,010 - -2.6
1,461,011 + -4.7
1,461,014 - -0.5
1,461,015 + -2.2
1,461,020 - -1.7
1,461,020 - -1.1
1,461,021 - -1.1
1,461,032 - -2.8
1,461,033 - -2.0
1,461,033 - -1.2
1,461,043 + -1.6
1,461,064 + -0.7
1,461,478 - -2.4
1,461,623 + -2.6
1,461,767 - -1.2
1,461,768 + -0.8
1,461,776 - -1.4
1,461,776 - -0.4
1,461,792 + -0.5
1,461,794 - -0.3

Or see this region's nucleotide sequence