Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_683

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9050 and 9051 are separated by 553 nucleotides9051 and 9052 are separated by 157 nucleotides mRNA_682: 9050 - K01487 E3.5.4.3, guaD guanine deaminase, at 1,636,253 to 1,638,256 9050 mRNA_683: 9051 - K01613 psd, PISD phosphatidylserine decarboxylase, at 1,638,810 to 1,640,262 9051 mRNA_684: 9052 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,640,420 to 1,643,110 9052

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,637,906 + 9050 mRNA_682 0.82 -1.5
1,638,147 - -1.2
1,638,152 + -2.2
1,638,185 - -0.0
1,638,191 + +0.6
1,638,311 - -1.2
1,638,314 - -1.5
1,638,319 - -0.1
1,638,320 - -3.1
1,638,321 + -2.8
1,638,328 + -1.2
1,638,331 - -2.2
1,638,347 - +0.4
1,638,358 + -1.6
1,638,358 - -0.5
1,638,375 + +0.0
1,638,458 - -3.7
1,638,481 - -1.3
1,638,496 + -1.3
1,638,642 - -0.4
1,638,659 + -4.0
1,638,818 + -3.1
1,639,101 - 9051 mRNA_683 0.20 -1.9
1,639,267 + 9051 mRNA_683 0.31 -0.8
1,639,284 + 9051 mRNA_683 0.33 -0.6
1,639,284 - 9051 mRNA_683 0.33 -1.6
1,639,558 + 9051 mRNA_683 0.51 -2.1
1,639,562 - 9051 mRNA_683 0.52 -0.8
1,639,803 - 9051 mRNA_683 0.68 +1.9
1,640,250 - -1.4
1,640,279 - -1.9
1,640,287 + -1.4
1,640,297 + +0.0
1,640,298 - -1.9
1,640,360 + -2.5
1,640,410 + -0.9
1,640,414 + -0.2
1,640,430 + -1.3
1,640,519 - -0.2
1,640,540 - -0.9
1,640,550 - -1.4
1,640,559 + -0.2
1,640,563 - -3.2
1,640,569 - -1.5
1,640,571 - -0.6
1,640,588 + -2.9
1,640,588 - -0.6
1,640,591 + +0.2
1,640,603 + -3.3
1,640,603 - -0.5
1,640,613 - -4.2
1,640,617 + -0.1
1,640,623 - -0.7
1,640,625 - -1.5
1,640,627 - +0.3
1,640,629 + -0.1
1,640,629 + -1.6
1,640,636 + -0.1
1,640,675 - -0.7
1,640,691 - 9052 mRNA_684 0.10 -1.1
1,640,693 + 9052 mRNA_684 0.10 -2.3
1,640,695 - 9052 mRNA_684 0.10 +0.3
1,640,696 - 9052 mRNA_684 0.10 -2.1
1,640,701 - 9052 mRNA_684 0.10 -2.7
1,640,703 - 9052 mRNA_684 0.11 -0.3
1,640,704 - 9052 mRNA_684 0.11 -1.6
1,640,708 + 9052 mRNA_684 0.11 -0.0
1,640,746 - 9052 mRNA_684 0.12 -1.6
1,640,751 - 9052 mRNA_684 0.12 -1.1
1,640,754 + 9052 mRNA_684 0.12 -1.7
1,640,757 + 9052 mRNA_684 0.13 -0.7
1,640,766 + 9052 mRNA_684 0.13 -2.1
1,640,774 - 9052 mRNA_684 0.13 -1.2
1,640,786 - 9052 mRNA_684 0.14 +2.1
1,640,808 + 9052 mRNA_684 0.14 -3.8
1,640,827 + 9052 mRNA_684 0.15 -1.7
1,640,834 - 9052 mRNA_684 0.15 -1.1
1,640,838 - 9052 mRNA_684 0.16 -1.3
1,640,847 - 9052 mRNA_684 0.16 +0.3
1,640,847 - 9052 mRNA_684 0.16 -3.6
1,640,850 + 9052 mRNA_684 0.16 -3.1
1,640,852 - 9052 mRNA_684 0.16 -0.5
1,640,855 + 9052 mRNA_684 0.16 +0.4
1,640,856 + 9052 mRNA_684 0.16 -1.7
1,640,857 + 9052 mRNA_684 0.16 -3.1
1,640,859 + 9052 mRNA_684 0.16 -1.1
1,640,860 + 9052 mRNA_684 0.16 -1.3
1,640,866 + 9052 mRNA_684 0.17 -0.1
1,640,872 + 9052 mRNA_684 0.17 -0.8
1,640,874 + 9052 mRNA_684 0.17 -1.8
1,640,875 + 9052 mRNA_684 0.17 -1.3
1,640,879 - 9052 mRNA_684 0.17 -2.0
1,640,881 - 9052 mRNA_684 0.17 +0.1
1,641,037 + 9052 mRNA_684 0.23 -1.3
1,641,167 - 9052 mRNA_684 0.28 +0.4

Or see this region's nucleotide sequence