Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_684

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9051 and 9052 are separated by 157 nucleotides9052 and 9053 are separated by 333 nucleotides mRNA_683: 9051 - K01613 psd, PISD phosphatidylserine decarboxylase, at 1,638,810 to 1,640,262 9051 mRNA_684: 9052 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,640,420 to 1,643,110 9052 mRNA_685: 9053 - K10577 UBE2I, UBC9 ubiquitin-conjugating enzyme E2 I, at 1,643,444 to 1,644,500 9053

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,639,558 + 9051 mRNA_683 0.51 -2.1
1,639,562 - 9051 mRNA_683 0.52 -0.8
1,639,803 - 9051 mRNA_683 0.68 +1.9
1,640,250 - -1.4
1,640,279 - -1.9
1,640,287 + -1.4
1,640,297 + +0.0
1,640,298 - -1.9
1,640,360 + -2.5
1,640,410 + -0.9
1,640,414 + -0.2
1,640,430 + -1.3
1,640,519 - -0.2
1,640,540 - -0.9
1,640,550 - -1.4
1,640,559 + -0.2
1,640,563 - -3.2
1,640,569 - -1.5
1,640,571 - -0.6
1,640,588 + -2.9
1,640,588 - -0.6
1,640,591 + +0.2
1,640,603 + -3.3
1,640,603 - -0.5
1,640,613 - -4.2
1,640,617 + -0.1
1,640,623 - -0.7
1,640,625 - -1.5
1,640,627 - +0.3
1,640,629 + -0.1
1,640,629 + -1.6
1,640,636 + -0.1
1,640,675 - -0.7
1,640,691 - 9052 mRNA_684 0.10 -1.1
1,640,693 + 9052 mRNA_684 0.10 -2.3
1,640,695 - 9052 mRNA_684 0.10 +0.3
1,640,696 - 9052 mRNA_684 0.10 -2.1
1,640,701 - 9052 mRNA_684 0.10 -2.7
1,640,703 - 9052 mRNA_684 0.11 -0.3
1,640,704 - 9052 mRNA_684 0.11 -1.6
1,640,708 + 9052 mRNA_684 0.11 -0.0
1,640,746 - 9052 mRNA_684 0.12 -1.6
1,640,751 - 9052 mRNA_684 0.12 -1.1
1,640,754 + 9052 mRNA_684 0.12 -1.7
1,640,757 + 9052 mRNA_684 0.13 -0.7
1,640,766 + 9052 mRNA_684 0.13 -2.1
1,640,774 - 9052 mRNA_684 0.13 -1.2
1,640,786 - 9052 mRNA_684 0.14 +2.1
1,640,808 + 9052 mRNA_684 0.14 -3.8
1,640,827 + 9052 mRNA_684 0.15 -1.7
1,640,834 - 9052 mRNA_684 0.15 -1.1
1,640,838 - 9052 mRNA_684 0.16 -1.3
1,640,847 - 9052 mRNA_684 0.16 +0.3
1,640,847 - 9052 mRNA_684 0.16 -3.6
1,640,850 + 9052 mRNA_684 0.16 -3.1
1,640,852 - 9052 mRNA_684 0.16 -0.5
1,640,855 + 9052 mRNA_684 0.16 +0.4
1,640,856 + 9052 mRNA_684 0.16 -1.7
1,640,857 + 9052 mRNA_684 0.16 -3.1
1,640,859 + 9052 mRNA_684 0.16 -1.1
1,640,860 + 9052 mRNA_684 0.16 -1.3
1,640,866 + 9052 mRNA_684 0.17 -0.1
1,640,872 + 9052 mRNA_684 0.17 -0.8
1,640,874 + 9052 mRNA_684 0.17 -1.8
1,640,875 + 9052 mRNA_684 0.17 -1.3
1,640,879 - 9052 mRNA_684 0.17 -2.0
1,640,881 - 9052 mRNA_684 0.17 +0.1
1,641,037 + 9052 mRNA_684 0.23 -1.3
1,641,167 - 9052 mRNA_684 0.28 +0.4
1,641,308 + 9052 mRNA_684 0.33 -0.0
1,641,478 - 9052 mRNA_684 0.39 -2.3
1,641,564 + 9052 mRNA_684 0.43 -2.3
1,641,583 + 9052 mRNA_684 0.43 +0.1
1,641,607 + 9052 mRNA_684 0.44 -1.2
1,641,875 - 9052 mRNA_684 0.54 -2.5
1,641,911 + 9052 mRNA_684 0.55 -1.2
1,642,038 + 9052 mRNA_684 0.60 -1.3
1,642,471 + 9052 mRNA_684 0.76 -1.5
1,642,562 - 9052 mRNA_684 0.80 -0.6
1,642,604 - 9052 mRNA_684 0.81 -1.9
1,642,988 - -0.8
1,643,048 + -1.9
1,643,185 - -2.2
1,643,293 - -0.4

Or see this region's nucleotide sequence