Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_690

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9057 and 9058 are separated by 164 nucleotides9058 and 9059 are separated by 590 nucleotides mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1,649,423 to 1,652,202 9057 mRNA_690: 9058 - HMMPfam-Tat binding protein 1(TBP-1)-interacting protein (TBPIP)-PF07106, at 1,652,367 to 1,653,596 9058 mRNA_691: 9059 - BLAST gliotoxin biosynthesis protein GliK [Marssonina b..., at 1,654,187 to 1,655,230 9059

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,651,469 - 9057 mRNA_689 0.74 -1.4
1,651,598 + 9057 mRNA_689 0.78 -1.7
1,652,012 + -1.8
1,652,172 - -0.4
1,652,199 - -0.5
1,652,236 + -3.4
1,652,303 + -0.9
1,652,317 + -0.7
1,652,324 + -2.0
1,652,330 - -1.1
1,652,330 + -2.7
1,652,379 + -1.1
1,652,783 + 9058 mRNA_690 0.34 -2.6
1,653,959 - -0.8
1,653,959 + +0.8
1,654,070 - -3.0
1,654,098 + -3.1
1,654,100 - -0.5
1,654,105 + -1.7
1,654,116 + -0.7
1,654,122 - -2.5
1,654,127 - -1.0
1,654,154 - -1.6
1,654,260 + -0.2
1,654,407 + 9059 mRNA_691 0.21 -2.5
1,654,408 - 9059 mRNA_691 0.21 -2.7
1,654,414 - 9059 mRNA_691 0.22 -2.1
1,654,578 - 9059 mRNA_691 0.37 -0.7
1,654,581 + 9059 mRNA_691 0.38 -1.4

Or see this region's nucleotide sequence