Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_703

Experiment: 40 hrs No Buoyancy Separation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9071 and 9072 are separated by 489 nucleotides mRNA_703: 9071 - K20223 IPO7, RANBP7 importin-7, at 1,681,177 to 1,685,261 9071 mRNA_704: 9072 - Hypothetical Protein, at 1,685,751 to 1,686,578 9072

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs No Buoyancy Separation
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1,680,420 - -1.2
1,680,735 + -1.4
1,680,741 + -0.9
1,680,743 - -3.3
1,680,827 - +0.6
1,680,865 + +0.4
1,680,884 - -1.3
1,680,886 + -0.9
1,681,023 + -0.7
1,681,028 - +0.2
1,681,060 + -1.6
1,681,067 - -1.2
1,681,080 + -2.8
1,681,187 - -2.7
1,681,352 + +0.6
1,681,466 + -3.3
1,681,839 + 9071 mRNA_703 0.16 -2.4
1,682,045 + 9071 mRNA_703 0.21 -1.2
1,682,197 + 9071 mRNA_703 0.25 -2.1
1,682,481 - 9071 mRNA_703 0.32 -2.4
1,682,634 + 9071 mRNA_703 0.36 -0.9
1,682,763 + 9071 mRNA_703 0.39 -1.4
1,682,919 + 9071 mRNA_703 0.43 -0.6
1,683,072 - 9071 mRNA_703 0.46 -0.8
1,683,516 - 9071 mRNA_703 0.57 +0.0
1,683,553 - 9071 mRNA_703 0.58 -1.9
1,683,874 + 9071 mRNA_703 0.66 -2.1
1,684,559 - 9071 mRNA_703 0.83 -2.0
1,685,145 + +0.4
1,685,152 + -3.9
1,685,280 + -1.8
1,685,285 - -2.3
1,685,285 - +0.5
1,685,288 - -1.1
1,685,289 + +0.1
1,685,294 - -1.5
1,685,296 - -3.5
1,685,303 + +1.4
1,685,307 + -2.5
1,685,313 + -0.4
1,685,453 + +0.8
1,685,478 + -0.1
1,685,480 - -2.9
1,685,488 - -2.5
1,685,586 - -0.6
1,685,612 + +1.1
1,685,615 - -0.3
1,685,716 - -1.4
1,685,766 - -3.0
1,685,767 + -2.0
1,685,811 + -0.7
1,685,900 - 9072 mRNA_704 0.18 -0.9
1,685,915 + 9072 mRNA_704 0.20 -0.4
1,686,066 + 9072 mRNA_704 0.38 +0.5
1,686,177 - 9072 mRNA_704 0.51 -1.0
1,686,182 + 9072 mRNA_704 0.52 -2.0

Or see this region's nucleotide sequence